Environmental DNA metabarcoding has recently emerged as a non destructive alternative to traditional sampling for characterising species assemblages. We here provide a consistent dataset synthetizing all eDNA sampling sites in French Guiana to date. We also provide a taxon by site matrix for fishes presence / absence as inferred from eDNA. Our aim is to allow a transparent communication to the stakeholders, and provide the foundation for a monitoring program based on eDNA.

The site Crique Armontabo is composed of four 3km-transects (20m wide). 5183 trees with dbh>=20cm have been recorded by Office national des forêts (ONF). Fauna inventories have been made by Office national de la chasse et de la faune sauvage (ONCFS) few days after. No under-storey plants inventory available. Soils have been described using 12 samples (1.20m depth max.). Laboratory analyses are available for one soil-profile.

The site Paracou is composed of two 3km-transects (20m wide). 2438 trees with dbh>=20cm have been recorded by Office national des forêts (ONF). No fauna inventories. No under-storey plants inventory. Soils have been described using 6 samples (1.20m depth max.). No laboratory analysis available for soils.

The site Saut Parasol is composed of four 3km-transects (20m wide). 4423 trees with dbh>=20cm have been recorded by Office national des forêts (ONF). Fauna inventories have been made by Office national de la chasse et de la faune sauvage (ONCFS) few days after. 716 under-storey plants have been recorded on 21 25m²-plots by Institut de recherche pour le développement (IRD). Soils have been described using 20 samples (1.20m depth max.). Laboratory analysis are available for one soil-profile.

The site Pic du Grand Croissant is composed of 4 3km-transects (20m wide). 3986 trees with dbh>=20cm have been recorded by Office national des forêts (ONF). Fauna have been inventoried few days after (ONCFS). No under-storey survey on this site. Soils have been described using 12 samples (1.20m depth max.). Laboratory analysis are available for one soil profiles.

The site Waki is composed of 4 3km-transects (20m wide). 5106 trees with dbh>=20cm have been recorded by Office national des forêts (ONF). Fauna have been inventoried few days after (ONCFS). 910 under-storey plants have been inventoried on 39 plots (IRD). Soils have been described using 25 samples (1.20m depth max.) and 4 soil pits. Laboratory analysis are available for one soil profiles and the four soil pits.

The site Piton de l'Armontabo is composed of four 3km-transects (20m wide). 4054 trees with dbh>=20cm have been recorded by Office National des Forêts (ONF). Fauna inventories have been made by Office national de la chasse et de la faune sauvage (ONCFS) few days after. There is no inventory of under-storey plants on this site. Soils have been described using 15 samples (1.20m depth max.). Laboratory analyses are available for one soil-profile.

The site Haute Beiman is composed of four 3km-transects (20m wide). 5207 trees with dbh>=20cm have been recorded by Office national des forêts (ONF). Fauna inventories have been made by Office national de la chasse et de la faune sauvage (ONCFS) few days after. 833 under-storey plants have been recorded on 44 25m²-plots. Soils have been described using 18 samples (1.20m depth max.). One laboratory analysis available for soils.

The site Toponowini is composed of four 3km-transects (20m wide). 4603 trees with dbh>=20cm have been recorded by Office national des forêts (ONF). Fauna inventories have been made by Office national de la chasse et de la faune sauvage (ONCFS) few days after. 506 under-storey plants have been recorded on 20 25m²-plots by Institut de recherche pour le développement (IRD). Soils have been described using 23 samples (1.20m depth max.). Laboratory analysis are available for two soil-profile.

The site Aimara is composed of four 3km-transects (20m wide). 4568 trees with dbh>=20cm have been recorded by Office national des forêts (ONF). Fauna inventories have been made by Office national de la chasse et de la faune sauvage (ONCFS) few days after. 534 under-storey plants have been recorded on 21 25m²-plots by Institut de recherche pour le développement (IRD). Soils have been described using 19 samples (1.20m depth max.). Laboratory analysis are available for one soil-profile.